CONN fcMRI tutorials

publicly available tutorials for self-guided learning of fcMRI analyses in CONN

Andy's Brain Book

CONN's chapter in Andy's Brain Book

Andrew Jahn channel

Tutorials in Andrew Jahn's YouTube channel

CONN channel

Tutorials in CONN's YouTube channel

CONN video tutorials

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Intro to resting state functional connectivity (video 1)

Creating a project, importing functional&structural data, preprocessing

Intro to resting state functional connectivity (video 2)

Exploring preprocessing output files, Setup & Denoising steps

Intro to resting state functional connectivity (video 3)

Computing Seed-based Correlations, and displaying second-level results

Default Mode Network connectivity

Brief display of functional connectivity patterns between Default Mode Network areas and the rest of the brain

Salience Network connectivity

Brief display of functional connectivity patterns between Salience Network areas and the rest of the brain

FrontoParietal Network connectivity

Brief display of functional connectivity patterns between lateral Frontoparietal Network areas and the rest of the brain

CONN reference slides

Preprocessing and Quality Assurance in CONN

Slides_F_CONN_Default_Preprocessing.pptx

Setup/Denoising/SBC-analyses in CONN

Slides_G_SETUP_DENOISING_FIRSTLEVELANALYSIS.pptx

Second-level analyses in CONN

GLM

Externally-organized tutorials

The following materials are part of Andrew Jahn youtube channel, a popular and very useful resource for learning about processing and statistical analysis steps using any of the major neuroimaging software packages. We also highly recommend Andy's Brain book for a very extensive and educational walk through different neuroimaging topics and software packages (including SPM, FSL, AFNI, FreeSurfer, and CONN). Andrew has been kind enough to organize and share several CONN tutorials, which can be accessed from the links below (for more information about Andy's tutorials and workshops see this link)

CONN tutorials in Andy's Brain Book

Andy's functional connectivity with the CONN toolbox (9 videos)

Andy's OSU CONN toolbox and fMRI pitfalls workshop (8 videos)

Andy's UMass Amherst CONN toolbox workshop (5 videos)

If you host or organize CONN tutorials or would like to share other CONN learning materials please let us know to have those added to this list

CONN fcMRI tutorials

CONN video tutorials

CONN reference slides

Externally-organized tutorials

See also: