Documentation
Technical documentation
Whitfield-Gabrieli, S., & Nieto-Castanon, A. (2012). Conn: A functional connectivity toolbox for correlated and anticorrelated brain networks. Brain connectivity, 2(3), 125-141
Nieto-Castanon, A. (2020). Handbook of functional connectivity Magnetic Resonance Imaging methods in CONN. Boston, MA: Hilbert Press
Software documentation
General software use: CONN toolbox manual
Using CONN in the context of High Performance Computing clusters or multi-processor environments: CONN grid, Cluster configuration
Scripting
Documentation for scripting CONN-based analyses: CONN batch commands
Documentation for scripting analyses of other (non-connectivity) data: CONN modular commands
Main user-facing scripting functions in CONN: conn_batch, conn_module, conn_display, conn_jobmanager
Examples of use: see "How to..." sections in fMRI Methods